genome collection file gcf assemblies Search Results


gcf 000819325 1 esch erichia coli cvm n3838 1ps v1 0 genomic  (ATCC)
95
ATCC gcf 000819325 1 esch erichia coli cvm n3838 1ps v1 0 genomic
Gcf 000819325 1 Esch Erichia Coli Cvm N3838 1ps V1 0 Genomic, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gcf 000153665 1 asm 15366v1 genomic  (ATCC)
91
ATCC gcf 000153665 1 asm 15366v1 genomic
Gcf 000153665 1 Asm 15366v1 Genomic, supplied by ATCC, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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reference c maltaromaticum atcc 35586 genome  (ATCC)
93
ATCC reference c maltaromaticum atcc 35586 genome
Reference C Maltaromaticum Atcc 35586 Genome, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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type strain b canis atcc 23 365 genome  (ATCC)
95
ATCC type strain b canis atcc 23 365 genome
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
Type Strain B Canis Atcc 23 365 Genome, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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c concisus genomes atcc 33237  (ATCC)
95
ATCC c concisus genomes atcc 33237
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
C Concisus Genomes Atcc 33237, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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s enterica serovar typhi strain ty2  (ATCC)
93
ATCC s enterica serovar typhi strain ty2
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
S Enterica Serovar Typhi Strain Ty2, supplied by ATCC, used in various techniques. Bioz Stars score: 93/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/genome+collection+file+gcf+assemblies/pmc10101011-190-47-68?v=ATCC
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sporothrix brasiliensis 5110  (ATCC)
95
ATCC sporothrix brasiliensis 5110
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
Sporothrix Brasiliensis 5110, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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atcc 19 977 reference genome  (ATCC)
99
ATCC atcc 19 977 reference genome
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
Atcc 19 977 Reference Genome, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dsm 45001 yes gcf 001646865 1  (ATCC)
91
ATCC dsm 45001 yes gcf 001646865 1
Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. <t>canis</t> isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.
Dsm 45001 Yes Gcf 001646865 1, supplied by ATCC, used in various techniques. Bioz Stars score: 91/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dsm 45001 yes gcf 001646865 1 - by Bioz Stars, 2026-08
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candida albicans sc5314  (ATCC)
99
ATCC candida albicans sc5314
List of Candidate Antifungal Resistance Genes Found after HMM Analysis Using the ResFungi HMM Database <xref ref-type= a " width="250" height="auto" />
Candida Albicans Sc5314, supplied by ATCC, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genomic sequences gca_001937115.1, atum_1.0  (ATUM Bio)
90
ATUM Bio genomic sequences gca_001937115.1, atum_1.0
List of Candidate Antifungal Resistance Genes Found after HMM Analysis Using the ResFungi HMM Database <xref ref-type= a " width="250" height="auto" />
Genomic Sequences Gca 001937115.1, Atum 1.0, supplied by ATUM Bio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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type strain atcc 17981  (ATCC)
95
ATCC type strain atcc 17981
List of Candidate Antifungal Resistance Genes Found after HMM Analysis Using the ResFungi HMM Database <xref ref-type= a " width="250" height="auto" />
Type Strain Atcc 17981, supplied by ATCC, used in various techniques. Bioz Stars score: 95/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. canis isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.

Journal: Scientific Reports

Article Title: MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks

doi: 10.1038/s41598-020-75960-3

Figure Lengend Snippet: Phage typing of Brucella isolates. Presented are the phage lysis patterns of the B. canis isolates after incubation with the bacteriophages Tb, Wb, BK2, F1, F25, Iz, Fi, and R/C. Black squares indicate lysis of the bacteria, and white squares indicate no lysis; v: variable. The phage lysis patterns of the reference strains B. canis RM6/66, B. melitensis 16 M, B. abortus 544, and B. suis 1330 are shown as determined in our study.

Article Snippet: Assembly quality was analyzed using Quast v4.5 by comparison to the type strain B. canis ATCC 23,365 genome (GenBank file GCF_000018525.1, accession no. NC_010103.1 for chromosome 1 and accession no. NC_010104.1 for chromosome 2 with a genome size of 3,312,769 bp in total).

Techniques: Lysis, Incubation, Bacteria

Identification of Brucella canis from diseased dogs by MALDI-TOF MS. ( A ) Comparison of pre-processed and normalized spectra of the reference strain B. canis RM 6/66 and a representative isolate from the kennel under investigation in the m/z range 3–12 kDa; ( B ) Gel view depiction of averaged group spectra. Arrows indicate m/z positions with high divergence in either intensity or mass-to-charge ratio between B. canis , B. suis bv 4 and B. suis bv 1; ( C ) A biomarker for discrimination of B. canis and B. suis bv 4 versus B. suis bv 1 found by Karger et al. and its double ( D ) and triple charged ( E ) ions (both from this study); ( F ) The mass peak at m/z 7073 is a unique biomarker for the group B. canis and B. suis bv 4; ( G ) B. canis and B. suis bv 4 may be discriminated from B. suis bv 1 by their higher intensity mass peaks at m/z 7661 (single charged) and ( H ) m/z 3830 (double charged). ( I + J ) Peaks at m/z 5900 and m/z 3926 discriminate B. canis from B. suis bv 4.

Journal: Scientific Reports

Article Title: MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks

doi: 10.1038/s41598-020-75960-3

Figure Lengend Snippet: Identification of Brucella canis from diseased dogs by MALDI-TOF MS. ( A ) Comparison of pre-processed and normalized spectra of the reference strain B. canis RM 6/66 and a representative isolate from the kennel under investigation in the m/z range 3–12 kDa; ( B ) Gel view depiction of averaged group spectra. Arrows indicate m/z positions with high divergence in either intensity or mass-to-charge ratio between B. canis , B. suis bv 4 and B. suis bv 1; ( C ) A biomarker for discrimination of B. canis and B. suis bv 4 versus B. suis bv 1 found by Karger et al. and its double ( D ) and triple charged ( E ) ions (both from this study); ( F ) The mass peak at m/z 7073 is a unique biomarker for the group B. canis and B. suis bv 4; ( G ) B. canis and B. suis bv 4 may be discriminated from B. suis bv 1 by their higher intensity mass peaks at m/z 7661 (single charged) and ( H ) m/z 3830 (double charged). ( I + J ) Peaks at m/z 5900 and m/z 3926 discriminate B. canis from B. suis bv 4.

Article Snippet: Assembly quality was analyzed using Quast v4.5 by comparison to the type strain B. canis ATCC 23,365 genome (GenBank file GCF_000018525.1, accession no. NC_010103.1 for chromosome 1 and accession no. NC_010104.1 for chromosome 2 with a genome size of 3,312,769 bp in total).

Techniques: Comparison, Biomarker Discovery

Consensus genome sequence of the Brucella canis outbreak strain from a kennel in São Paulo, Brazil . Shown are the two chromosomes of the B. canis BfR-SPBR-consensus genome derived from whole genome sequencing results of four B. canis isolates. The genomes were sequenced using Illumina NGS technology. The open reading frames (CDS) determined by Prokka v1.12 are presented in the two outer circles with grey (+ strand) and black (-strand) boxes. Positions with nucleotide sequence variations in the B. canis BfR-SPBR-consensus genome compared to the reference strain B. canis ATCC 23365 are depicted in the inner circle and marked with the colors red (stop-loss variants), orange (missense variants), blue (upstream or downstream variants) and green (synonymous variants). Open reading frames affected by missense variants or stop-loss variants are shown in red together with the corresponding protein IDs given as NCBI numbers (WP_xxxxxxxxx.1).

Journal: Scientific Reports

Article Title: MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks

doi: 10.1038/s41598-020-75960-3

Figure Lengend Snippet: Consensus genome sequence of the Brucella canis outbreak strain from a kennel in São Paulo, Brazil . Shown are the two chromosomes of the B. canis BfR-SPBR-consensus genome derived from whole genome sequencing results of four B. canis isolates. The genomes were sequenced using Illumina NGS technology. The open reading frames (CDS) determined by Prokka v1.12 are presented in the two outer circles with grey (+ strand) and black (-strand) boxes. Positions with nucleotide sequence variations in the B. canis BfR-SPBR-consensus genome compared to the reference strain B. canis ATCC 23365 are depicted in the inner circle and marked with the colors red (stop-loss variants), orange (missense variants), blue (upstream or downstream variants) and green (synonymous variants). Open reading frames affected by missense variants or stop-loss variants are shown in red together with the corresponding protein IDs given as NCBI numbers (WP_xxxxxxxxx.1).

Article Snippet: Assembly quality was analyzed using Quast v4.5 by comparison to the type strain B. canis ATCC 23,365 genome (GenBank file GCF_000018525.1, accession no. NC_010103.1 for chromosome 1 and accession no. NC_010104.1 for chromosome 2 with a genome size of 3,312,769 bp in total).

Techniques: Sequencing, Derivative Assay

Phylogenetic comparison of the Brucella canis BfR-SPBR-consensus strain newly identified in São Paulo with isolates from worldwide outbreaks. The genetic relationship between the outbreak strain B. canis BfR-SPBR-consensus and previously sequenced B. canis strains was determined by SNP analysis. The genome sequences were analyzed with ParSNP, FastTree2 and iTol. The B. suis outgroup strain and the B. canis outbreak strain under study are marked in bold. Shown is a neighbor-joining phylogenetic tree with the branch length displaying the relative genetic distance. All bootstrap support values were either below 0.5 or above 0.8.

Journal: Scientific Reports

Article Title: MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks

doi: 10.1038/s41598-020-75960-3

Figure Lengend Snippet: Phylogenetic comparison of the Brucella canis BfR-SPBR-consensus strain newly identified in São Paulo with isolates from worldwide outbreaks. The genetic relationship between the outbreak strain B. canis BfR-SPBR-consensus and previously sequenced B. canis strains was determined by SNP analysis. The genome sequences were analyzed with ParSNP, FastTree2 and iTol. The B. suis outgroup strain and the B. canis outbreak strain under study are marked in bold. Shown is a neighbor-joining phylogenetic tree with the branch length displaying the relative genetic distance. All bootstrap support values were either below 0.5 or above 0.8.

Article Snippet: Assembly quality was analyzed using Quast v4.5 by comparison to the type strain B. canis ATCC 23,365 genome (GenBank file GCF_000018525.1, accession no. NC_010103.1 for chromosome 1 and accession no. NC_010104.1 for chromosome 2 with a genome size of 3,312,769 bp in total).

Techniques: Comparison

Distribution of single-nucleotide polymorphisms (SNPs) in South American Brucella canis isolates. The positions of SNPs in the genomes of South American B. canis strains are shown in comparison to the reference strain B. canis ATCC 23365. The two chromosomes of the B. canis isolates are color-coded and the background colors show the geographical origin for each strain. The strains are presented in the following order from inside to outside: 10469 (1), B. canis BfR-SPBR-consensus (2), 07-2859-6070 (3), CNBG 1324 (4), 07-2859-6071 (5), CNGB 513 (6), SCL (7), Oliveri (8), CNGB 1172 (9) and ATCC 23365 (10). SNPs are shown as colored strokes in red (stop-loss variants), in light pink (stop-gain variants), orange (missense variants), blue (upstream or downstream variants) and green (synonymous variants).

Journal: Scientific Reports

Article Title: MALDI-TOF MS and genomic analysis can make the difference in the clarification of canine brucellosis outbreaks

doi: 10.1038/s41598-020-75960-3

Figure Lengend Snippet: Distribution of single-nucleotide polymorphisms (SNPs) in South American Brucella canis isolates. The positions of SNPs in the genomes of South American B. canis strains are shown in comparison to the reference strain B. canis ATCC 23365. The two chromosomes of the B. canis isolates are color-coded and the background colors show the geographical origin for each strain. The strains are presented in the following order from inside to outside: 10469 (1), B. canis BfR-SPBR-consensus (2), 07-2859-6070 (3), CNBG 1324 (4), 07-2859-6071 (5), CNGB 513 (6), SCL (7), Oliveri (8), CNGB 1172 (9) and ATCC 23365 (10). SNPs are shown as colored strokes in red (stop-loss variants), in light pink (stop-gain variants), orange (missense variants), blue (upstream or downstream variants) and green (synonymous variants).

Article Snippet: Assembly quality was analyzed using Quast v4.5 by comparison to the type strain B. canis ATCC 23,365 genome (GenBank file GCF_000018525.1, accession no. NC_010103.1 for chromosome 1 and accession no. NC_010104.1 for chromosome 2 with a genome size of 3,312,769 bp in total).

Techniques: Comparison

List of Candidate Antifungal Resistance Genes Found after HMM Analysis Using the ResFungi HMM Database <xref ref-type= a " width="100%" height="100%">

Journal: ACS Omega

Article Title: ResFungi: A Novel Protein Database of Antifungal Drug Resistance Genes Using a Hidden Markov Model Profile

doi: 10.1021/acsomega.4c02198

Figure Lengend Snippet: List of Candidate Antifungal Resistance Genes Found after HMM Analysis Using the ResFungi HMM Database a

Article Snippet: The following species had their genome and proteome data obtained from public databases: Candida albicans SC5314 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000182965.3/ ), Candida auris B8441 ( http://www.candidagenome.org/download/sequence/C_auris_B8441/current/ ), Cryptococcus neoformans var. grubii H99 ( https://fungi.ensembl.org/Cryptococcus_neoformans_var_grubii_h99_gca_000149245/Info/Index ), Aspergillus fumigatus Af293 ( https://www.ncbi.nlm.nih.gov/datasets/taxonomy/746128/ ), Aspergillus terreus NIH2624 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000149615.1/ ), Sporothrix brasiliensis 5110 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000820605.1/ ), Sporothrix schenckii ATCC 58251 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000474925.1/ ), Histoplasma capsulatum G186AR ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000150115.1/ ), Coccidioides immitis H538.4 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000149815.1/ ), Paracoccidioides brasiliensis Pb03 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_000150475.2/ ), Trichophyton rubrum CBS 118892 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000151425.1/ ), Microsporum canis CBS 113480 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000151145.1/ ), Fusarium graminearum PH-1 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000240135.3/ ), Exophiala mesophila CBS 40295 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000836275.1/ ), and Fonsecaea multimorphosa CBS 102226 ( https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000836435.1/ ).

Techniques: Activity Assay, Variant Assay